Dependencies

Software

1. Mandatory

   1.1. OS:

   • Linux

   1.2. Python:

   • matplotlib

   • numpy

   • scipy

2. Optional

   2.1. OS:

   • xdpyinfo [needed for adjusting default figure size and dpi]

   • xrandr [needed for adjusting default figure size and dpi]

   2.2. Python:

   • asdf [needed for reading/writing ASDF files]

   • h5py [needed for reading/writing hdf5 files]

   • klusta [needed for spike clustering analysis]

   • opencv-python [needed for video analysis and IO]

   • pandas [needed for statistics]

   • pyserial [needed for Arduino control]

   • pytables [needed for statistics]

   • rpy2 [needed for statistics]

   • sounddevice [needed for sound stimulation]

   • spyking-circus [needed for spike clustering analysis]

   • statsmodels [needed for statistics]

   • unidip [needed for statistics]

Hardware

1. Analysis:

   • [None]

2. Exps:

   • Sound card

   • Arduino Uno [optional, needed for syncing devices and timestamps]

   • Data Acquisition card [optional, needed for recordings, tested with Open-ephys DAQ]

3. IO:

   • Sound card [for sciscripts.IO.SoundCard]

   • Arduino Uno [for sciscripts.IO.Arduino]